Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1238155_1238358_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1238155 - 1238358

Intron Length:

204

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGCG

5'SS Class:

strong_major

3'SS Sequence:

CTTCTGGTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGGGAC

U12 Branch Point Sequence:

CCTTCCTGTCCT

Flanking Amino Acid:

LAAYRQDVDAAALARL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

66.5

39.1

Major BPS

42.6

-0.4

1.5

34.5

43.7

Major PPT

68.7

0.42

1.1

64.5

41.4

Minor 5ss

24.1

-3

3.2

29.4

43.5

Minor BPS

40.1

-0.7

3.6

68.48

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010363

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010814

1238137 - 1239924

1788