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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1248884_1250775_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1248884 - 1250775
Intron Length:
1892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATTAT
U12 Branch Point Sequence:
AAAAACTTGACA
Flanking Amino Acid:
QQAGDVEIPQELDQLPGTSA
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
64.6
0.36
1.1
55.7
39.9
Major PPT
94.3
1
0.5
93.3
15.5
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
53.9
0.12
1.6
60.65
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010875
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011316
1248413 - 1252971
4559