Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1260701_1261184_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1260701 - 1261184

Intron Length:

484

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TTGTTCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

TTGTGCTCATTG

Flanking Amino Acid:

VVLFIDAAEGVMLNTERLIK

Intron Amino Acid Position:

235

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

75.7

34.4

Major BPS

79.7

0.74

79.6

35.6

Major PPT

79.1

0.65

0.8

74.1

31.1

Minor 5ss

31.4

-2.1

3.2

35.2

41.4

Minor BPS

45.3

-0.5

2.2

55.1

46.5

Associated Gene:

Gene:

EFTUD2

Ensembl Gene ID:

ENSAPLG00000011036

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027346

1254162 - 1275159

20998

ENSAPLT00000011557

1254161 - 1275687

21527