Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1261352_1262422_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1261352 - 1262422

Intron Length:

1071

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TGTCTCCTCTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAA

U12 Branch Point Sequence:

TTGTCTCTAAAA

Flanking Amino Acid:

HIVDEVNGLISMYSTDENLV

Intron Amino Acid Position:

290

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.91

0.8

80.6

31.9

Major BPS

0.57

73.6

28.6

Major PPT

79.9

0.67

0.8

77.3

31.4

Minor 5ss

41.4

-1

3.1

45.7

Minor BPS

60.3

0.32

1.8

73.3

38.4

Associated Gene:

Gene:

EFTUD2

Ensembl Gene ID:

ENSAPLG00000011036

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027346

1254162 - 1275159

20998

ENSAPLT00000011557

1254161 - 1275687

21527