Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1320811_1321029_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1320811 - 1321029

Intron Length:

219

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TGTTACCTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTTAC

U12 Branch Point Sequence:

TTGCTGTTACCT

Flanking Amino Acid:

LKNLSNSCRARGVEGCPMHS

Intron Amino Acid Position:

949

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

78.8

38.3

Major BPS

59.1

0.23

1.2

52.7

42.9

Major PPT

76.7

0.6

0.9

70.6

35.8

Minor 5ss

40.5

-1.1

3.2

58.3

46.4

Minor BPS

48.3

-0

2.3

72.43

44.7

Associated Gene:

Gene:

MEIOC

Ensembl Gene ID:

ENSAPLG00000003270

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003041

1319959 - 1362068

42110