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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1322017_1323992_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1322017 - 1323992
Intron Length:
1976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GCTGTCTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TAACTTCTAACC
Flanking Amino Acid:
CLASGSKIHKAGKLKPPFLK
Intron Amino Acid Position:
895

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
74.4
0.55
0.9
65.6
41
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
51.7
0.03
1.6
62.47
36.2

Associated Gene:

Gene:
MEIOC
Ensembl Gene ID:
ENSAPLG00000003270
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003041
1319959 - 1362068
42110