Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1324030_1324594_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1324030 - 1324594

Intron Length:

565

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACTGAC

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTCCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

CCCATATTAAAT

Flanking Amino Acid:

GSRKQSQKTEAKCLASGSKI

Intron Amino Acid Position:

883

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

1.1

75.8

34.3

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

86.5

0.82

0.6

85.6

21.6

Minor 5ss

38.5

-1.3

3.2

45.2

Minor BPS

-0.1

1.7

58.27

44.6

Associated Gene:

Gene:

MEIOC

Ensembl Gene ID:

ENSAPLG00000003270

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003041

1319959 - 1362068

42110