Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1349674_1353549_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1349674 - 1353549

Intron Length:

3876

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTGAGTTGT

5'SS Class:

major

3'SS Sequence:

AAATGTTCATTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTGTAAC

U12 Branch Point Sequence:

ACAGCATGAACT

Flanking Amino Acid:

IVDQLREQARVVTLLGKMER

Intron Amino Acid Position:

762

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

68.6

39.1

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

59.1

0.21

56.9

43.4

Minor 5ss

37.7

-1.4

45.7

43.5

Minor BPS

49.1

0.01

1.8

65.59

44.3

Associated Gene:

Gene:

MEIOC

Ensembl Gene ID:

ENSAPLG00000003270

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003324

1345961 - 1362068

16108

ENSAPLT00000003323

1345961 - 1362068

16108