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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1358947_1362062_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1358947 - 1362062
Intron Length:
3116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGA
5'SS Class:
strong_major
3'SS Sequence:
ATATAAAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TCATATTGAAAT
Flanking Amino Acid:
MENEENVDLPQT
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.7
41.7
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
61.5
0.26
1.1
53.6
44.2
Minor 5ss
24.7
-2.9
3
29.8
43.1
Minor BPS
49.8
0.06
1.7
68.15
42.1

Associated Gene:

Gene:
MEIOC
Ensembl Gene ID:
ENSAPLG00000003270
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003041
1319959 - 1362068
42110