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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1360639_1362062_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1360639 - 1362062
Intron Length:
1424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTGCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTTTTTACCC
Flanking Amino Acid:
MEPKVACRGGSR
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.7
41.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
71.9
0.49
0.9
68.6
37.3
Minor 5ss
24.7
-2.9
3
29.8
43.1
Minor BPS
64.2
0.43
1.6
73.03
38.7

Associated Gene:

Gene:
MEIOC
Ensembl Gene ID:
ENSAPLG00000003270
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003324
1345961 - 1362068
16108
ENSAPLT00000003323
1345961 - 1362068
16108