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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1390211_1391981_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1390211 - 1391981
Intron Length:
1771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTAAAA
Flanking Amino Acid:
MVLLSPPGFPVSLYTFDKAK
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.5
38.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.4
0.95
0.7
87.7
29.7
Minor 5ss
30.3
-2.3
3.3
38
46.8
Minor BPS
71
0.66
1.3
76.89
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003325
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003483
1389894 - 1447265
57372