Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1392149_1393502_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1392149 - 1393502

Intron Length:

1354

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTGATTT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTTTCCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

AATTACTTAAAA

Flanking Amino Acid:

NSQAFSIGQQLVFNFNDKLF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

0.9

79.4

29.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

84.1

0.77

0.7

79.5

26.1

Minor 5ss

44.5

-0.6

3.1

64.3

47.2

Minor BPS

66.5

0.52

1.6

74.06

36.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003325

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003483

1389894 - 1447265

57372