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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1412435_1414344_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1412435 - 1414344
Intron Length:
1910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
TTCTCTCCAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TTCTCTCCAATA
Flanking Amino Acid:
FADAEEEQRRLGANSGVHII
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
58.6
42
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
73.7
0.53
0.8
70.5
29.1
Minor 5ss
29.7
-2.3
3.2
30.2
42.9
Minor BPS
52.1
0.06
1.9
67.95
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003325
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003483
1389894 - 1447265
57372