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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1425681_1425871_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1425681 - 1425871
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATTGCTTAATG
Flanking Amino Acid:
VVVDDIERLLDYVPIGPRFS
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.1
30.7
Major BPS
100
1.24
0.5
100
0
Major PPT
91.5
0.93
0.7
89.9
24.7
Minor 5ss
34.1
-1.8
2.8
39.6
46.4
Minor BPS
63.7
0.29
1.8
66.95
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003325
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003483
1389894 - 1447265
57372