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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1434916_1435685_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1434916 - 1435685
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
CCTGACTTAATT
Flanking Amino Acid:
TGEQLMEALELLGNFKDKER
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
85.7
0.8
0.8
77.5
41
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
60.2
0.4
1.7
72.18
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003325
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003483
1389894 - 1447265
57372