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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1501499_1504886_F

Intron Information:

Intron Rank:
141387
Intron Class:
major
Intron Phase:
Intron Coordinates:
1501499 - 1504886
Intron Length:
3388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
CTTCTCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
87.5
0.84
0.8
88.9
28.1
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
79.7
1.01
1.2
88.99
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026144
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029656
1500990 - 1505912
4923