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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1559552_1563981_F

Intron Information:

Intron Rank:
140998
Intron Class:
major
Intron Phase:
Intron Coordinates:
1559552 - 1563981
Intron Length:
4430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTTCTTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.3
0.75
0.8
78
30.5
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
60
0.39
1.6
76.38
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025934
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039695
1558968 - 1564853
5886