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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1588985_1591708_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1588985 - 1591708
Intron Length:
2724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGGCA
5'SS Class:
major
3'SS Sequence:
TTTTTATTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTCTTTTTATT
Flanking Amino Acid:
GLRDQRVTLKGTHKKILDVA
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
62.8
37.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.7
0.8
0.7
85.7
27.6
Minor 5ss
22.7
-3.1
3.4
29.2
43.6
Minor BPS
55.6
0.26
1.6
73.31
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004588
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004710
1579441 - 1591870
12430