Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1598254_1606912_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1598254 - 1606912

Intron Length:

8659

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTAGT

5'SS Class:

major

3'SS Sequence:

TTTTTCTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTCTTTTTCT

Flanking Amino Acid:

SFPYAVSGKGFCCTVNHWS*

Intron Amino Acid Position:

327

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.1

75.1

40.8

Major BPS

90.4

0.7

90.2

19.3

Major PPT

97.2

1.06

0.5

96.4

12.2

Minor 5ss

40.4

-1.1

2.9

61.4

42.9

Minor BPS

48.1

-0

3.6

87.77

37.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004814

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004954

1598225 - 1619432

21208