Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1607002_1607972_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1607002 - 1607972

Intron Length:

971

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGAGTGC

5'SS Class:

major

3'SS Sequence:

TGTAGTCTTTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

TTTGTCATGAGA

Flanking Amino Acid:

LWGMTNSGINSSSTTFGQKN

Intron Amino Acid Position:

297

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.4

0.46

1.1

58.1

42.1

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

77.9

0.63

0.9

73.7

41.7

Minor 5ss

-1.7

3.6

49.7

46.9

Minor BPS

48.1

-0.1

66.48

40.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004814

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022633

1605184 - 1619432

14249

ENSAPLT00000004954

1598225 - 1619432

21208