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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1608034_1608493_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1608034 - 1608493
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
TTAGTTTTGAGC
Flanking Amino Acid:
APPCDEDWETELLEQPNSPF
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
74.8
35.1
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
92.2
0.95
0.6
88.1
21.7
Minor 5ss
32.7
-2
3.1
39.8
40.4
Minor BPS
49.2
-0
1.7
60.92
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004814
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004954
1598225 - 1619432
21208
ENSAPLT00000022633
1605184 - 1619432
14249
ENSAPLT00000021702
1605658 - 1619432
13775