About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1636797_1649144_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1636797 - 1649144
Intron Length:
12348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
TATTCTCCACTT
Flanking Amino Acid:
GSGTRLSVQPKVVPSPSVYR
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
30.1
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
81.1
0.7
0.8
77.6
29.9
Minor 5ss
31.6
-2.1
3.2
41.8
38.8
Minor BPS
46.6
-0.1
2
69.95
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015744
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024618
1636691 - 1653555
16865