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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1651208_1651639_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1651208 - 1651639
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATACCTTTATT
Flanking Amino Acid:
VMTILMWKKKE*
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
92
0.94
0.7
87.5
30
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
67.2
0.62
1.6
82
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015744
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024618
1636691 - 1653555
16865