About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1675757_1676580_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1675757 - 1676580
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTATAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.1
0.66
0.9
72.9
42
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
56.1
0.27
2
78.55
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008120
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047869
1675641 - 1694052
18412
ENSAPLT00000033858
1675641 - 1694052
18412
ENSAPLT00000028640
1675641 - 1694052
18412
ENSAPLT00000025248
1675668 - 1691096
15429