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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1675757_1677092_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1675757 - 1677092
Intron Length:
1336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
GAATGTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTGTTCTAAGCA
Flanking Amino Acid:
AAGQEKHIPSGYPLQIPVDD
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
72.2
0.5
1
62
48
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
55.5
0.17
1.9
70.47
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008120
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020739
1675668 - 1689068
13401
ENSAPLT00000008456
1675668 - 1694173
18506
ENSAPLT00000039743
1675668 - 1691096
15429