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Intron Name: Anas_platyrhynchos_platyrhynchos_28_1677180_1678421_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1677180 - 1678421

Intron Length:

1242

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGAGCT

5'SS Class:

major

3'SS Sequence:

CGTTGTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTGAA

U12 Branch Point Sequence:

GCTATGTGAAAG

Flanking Amino Acid:

SDAKSTPTTEDATAPLVEEG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

68.6

36.5

Major BPS

63.3

0.33

1.2

55.1

42.1

Major PPT

83.3

0.75

0.9

80.3

37.3

Minor 5ss

26.2

-2.7

3.5

38.7

46.6

Minor BPS

40.1

-0.8

2.1

42.6

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008120

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028640

1675641 - 1694052

18412

ENSAPLT00000047869

1675641 - 1694052

18412

ENSAPLT00000025248

1675668 - 1691096

15429

ENSAPLT00000039743

1675668 - 1691096

15429

ENSAPLT00000020739

1675668 - 1689068

13401

ENSAPLT00000036911

1676447 - 1693891

17445

ENSAPLT00000008456

1675668 - 1694173

18506

ENSAPLT00000033858

1675641 - 1694052

18412