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Intron Name: Anas_platyrhynchos_platyrhynchos_28_1678509_1680081_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1678509 - 1680081

Intron Length:

1573

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGAG

5'SS Class:

strong_major

3'SS Sequence:

GAACTGGGACCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTCCTCTGAACT

Flanking Amino Acid:

QHGEIPEGTTAEEAGVGATP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.1

37.5

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

48.2

-0.1

1.1

35.9

44.3

Minor 5ss

23.1

-3.1

3.2

27.7

44.2

Minor BPS

0.64

1.4

82.07

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008120

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020739

1675668 - 1689068

13401

ENSAPLT00000036911

1676447 - 1693891

17445

ENSAPLT00000008456

1675668 - 1694173

18506

ENSAPLT00000033858

1675641 - 1694052

18412

ENSAPLT00000028640

1675641 - 1694052

18412

ENSAPLT00000047869

1675641 - 1694052

18412

ENSAPLT00000025248

1675668 - 1691096

15429

ENSAPLT00000039743

1675668 - 1691096

15429