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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1680148_1686237_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1680148 - 1686237
Intron Length:
6090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAC
U12 Branch Point Sequence:
AGTCCCAAAACG
Flanking Amino Acid:
EDHASGDTAQARIDSKDKEG
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
72.7
38.3
Major BPS
56.8
0.17
1.4
61.4
43.2
Major PPT
79.3
0.66
0.9
80
32
Minor 5ss
30.9
-2.2
2.6
34.6
40.9
Minor BPS
47.9
-0.2
2
57.51
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008120
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036911
1676447 - 1693891
17445