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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1683984_1686237_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1683984 - 1686237
Intron Length:
2254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAC
U12 Branch Point Sequence:
AGTCCCAAAACG
Flanking Amino Acid:
KAGSRVPLRKARIDSKDKEG
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
66
39.9
Major BPS
56.8
0.17
1.4
61.4
43.2
Major PPT
79.3
0.66
0.9
80
32
Minor 5ss
26.5
-2.7
3.1
32.3
42.4
Minor BPS
47.9
-0.2
2
57.51
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008120
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028640
1675641 - 1694052
18412
ENSAPLT00000025248
1675668 - 1691096
15429
ENSAPLT00000047869
1675641 - 1694052
18412
ENSAPLT00000020739
1675668 - 1689068
13401
ENSAPLT00000039743
1675668 - 1691096
15429
ENSAPLT00000008456
1675668 - 1694173
18506
ENSAPLT00000033858
1675641 - 1694052
18412