Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1686294_1688457_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1686294 - 1688457

Intron Length:

2164

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCTAA

5'SS Class:

strong_major

3'SS Sequence:

CTTGTGTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCATCAA

U12 Branch Point Sequence:

CCTGCATCAACC

Flanking Amino Acid:

GAEAEEKKPKGPGGTKAATP

Intron Amino Acid Position:

427

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.3

0.95

0.8

80.2

30.6

Major BPS

49.5

-0

1.3

53.9

41.5

Major PPT

74.1

0.54

0.9

65.2

41.2

Minor 5ss

43.2

-0.8

2.9

55.3

48.9

Minor BPS

48.4

-0.1

59.43

45.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008120

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047869

1675641 - 1694052

18412

ENSAPLT00000020739

1675668 - 1689068

13401