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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1687604_1688457_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1687604 - 1688457
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCATCAA
U12 Branch Point Sequence:
CCTGCATCAACC
Flanking Amino Acid:
STGTQETKAKGPGGTKAATP
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
49.5
-0
1.3
53.9
41.5
Major PPT
74.1
0.54
0.9
65.2
41.2
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
48.4
-0.1
2
59.43
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008120
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033858
1675641 - 1694052
18412
ENSAPLT00000028640
1675641 - 1694052
18412
ENSAPLT00000039743
1675668 - 1691096
15429
ENSAPLT00000025248
1675668 - 1691096
15429
ENSAPLT00000036911
1676447 - 1693891
17445
ENSAPLT00000008456
1675668 - 1694173
18506