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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1689824_1692672_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1689824 - 1692672
Intron Length:
2849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACGTG
5'SS Class:
major
3'SS Sequence:
CTGGCTACCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTTTCTCACGC
Flanking Amino Acid:
NLKHQPGGGKVQIINKKLDF
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.5
41.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
53.7
0.08
1.1
52.5
35.8
Minor 5ss
39.3
-1.2
3.5
55
49.2
Minor BPS
47.4
-0.2
2.1
62.67
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008120
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033858
1675641 - 1694052
18412
ENSAPLT00000028640
1675641 - 1694052
18412
ENSAPLT00000008456
1675668 - 1694173
18506
ENSAPLT00000047869
1675641 - 1694052
18412
ENSAPLT00000036911
1676447 - 1693891
17445