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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1690437_1692109_R

Intron Information:

Intron Rank:
1
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
1690437 - 1692109
Intron Length:
1673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTTTTCTTA
5'SS Class:
weak_minor
3'SS Sequence:
CTGGCCACAGCAG|C
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
CTCACCAGACCT
Flanking Amino Acid:
VAARDEVPHQHSSSSAPAPS
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
46.7
-0.2
1.2
46.6
37.9
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
59
0.2
1
52.6
36.6
Minor 5ss
57.6
0.26
2.3
71.2
39.9
Minor BPS
44.2
-0.3
2
62.41
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026065
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031613
1687494 - 1692333
4840