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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1710731_1711697_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1710731 - 1711697
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
ACGGTCTGACTT
Flanking Amino Acid:
KLQYKEILTPSWREVDIGAL
Intron Amino Acid Position:
828

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
75.5
35.8
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
78.8
0.65
1
72.9
42.2
Minor 5ss
32.9
-2
3.3
44.7
43.3
Minor BPS
44
-0.3
1.7
53.77
42.6

Associated Gene:

Gene:
KANSL1
Ensembl Gene ID:
ENSAPLG00000009179
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020197
1709770 - 1803883
94114
ENSAPLT00000017587
1709770 - 1777202
67433
ENSAPLT00000009569
1709770 - 1777119
67350
ENSAPLT00000042793
1709770 - 1803883
94114