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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1720263_1722786_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1720263 - 1722786
Intron Length:
2524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTCCCCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
ATAGTCTGAATT
Flanking Amino Acid:
PSSIMPLSKKVHRNSLVRCS
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.6
30.6
Major BPS
79
0.72
1
69
38.9
Major PPT
73.6
0.53
0.8
64.7
36.4
Minor 5ss
34.7
-1.7
2.6
44.5
42.8
Minor BPS
57.5
0.31
1.5
71.66
39.5

Associated Gene:

Gene:
KANSL1
Ensembl Gene ID:
ENSAPLG00000009179
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042793
1709770 - 1803883
94114
ENSAPLT00000020197
1709770 - 1803883
94114
ENSAPLT00000017587
1709770 - 1777202
67433
ENSAPLT00000009569
1709770 - 1777119
67350