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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1844132_1844983_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
1844132 - 1844983
Intron Length:
852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
GGTTGTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GCTGCATTAAGC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
76.7
33.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
71.7
0.49
1
61.8
44.4
Minor 5ss
29.1
-2.4
2.7
33.3
41.7
Minor BPS
48.9
-0.1
2
59.92
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023845
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029578
1843472 - 1848381
4910