Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1846257_1846396_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1846257 - 1846396

Intron Length:

140

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACAGCA

5'SS Class:

major

3'SS Sequence:

CCTCCCCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAGAAA

U12 Branch Point Sequence:

TCATCTCTGACC

Flanking Amino Acid:

LKVLGKPRPEEMNTKVLDFE

Intron Amino Acid Position:

198

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.64

1.1

68.7

36.4

Major BPS

53.7

0.09

1.4

64.3

39.6

Major PPT

80.2

0.68

0.7

76.6

25.4

Minor 5ss

36.3

-1.6

3.3

48.6

47.1

Minor BPS

57.3

0.21

1.7

38.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023845

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029578

1843472 - 1848381

4910