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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1846547_1847251_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1846547 - 1847251
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
TTCCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCCGAA
U12 Branch Point Sequence:
GGCAGCCGAACT
Flanking Amino Acid:
GLGTLGLPQEEFKEAFSLFD
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.8
43.5
Major BPS
44.3
-0.3
1.2
35.9
33.9
Major PPT
78.5
0.64
0.7
73.3
24.9
Minor 5ss
32.2
-2
3.1
34.8
41.4
Minor BPS
41.5
-0.5
2.1
56.3
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023845
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029578
1843472 - 1848381
4910