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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1864389_1865009_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1864389 - 1865009
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTACG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTGCTCTTCATT
Flanking Amino Acid:
IPILVATDVAARGLDIPSIK
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.5
40.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.6
0.73
0.8
76.5
30.7
Minor 5ss
35
-1.7
2.8
43.3
43.8
Minor BPS
58.7
0.35
1.8
76.51
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010544
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011076
1862694 - 1869893
7200