About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1865287_1866249_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1865287 - 1866249
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
GCTTGTCTAATT
Flanking Amino Acid:
IRVVQGDIGEANEDVTQIVE
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
73.5
37.2
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
34.6
-1.8
2.8
42.9
43.8
Minor BPS
48.7
-0
2.1
68.74
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010544
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011076
1862694 - 1869893
7200