Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1866368_1867647_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1866368 - 1867647

Intron Length:

1280

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTACTGACC

5'SS Class:

weak_major

3'SS Sequence:

TCGTGGAGCTCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TAATTCTGAAAA

Flanking Amino Acid:

ADRMFDMGFGIHFLFLSALL

Intron Amino Acid Position:

162

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.4

0.2

1.2

56.4

40.7

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

58.1

0.18

1.1

54.3

44.7

Minor 5ss

-1.7

3.4

48.4

40.8

Minor BPS

59.5

0.3

1.5

67.87

37.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010544

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011076

1862694 - 1869893

7200