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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1867752_1868567_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1867752 - 1868567
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATTT
Flanking Amino Acid:
EGAEIVVCTPGRLIDHVKKK
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.2
34.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.6
0.87
0.6
84.4
23.7
Minor 5ss
37.5
-1.4
2.7
48.2
40.4
Minor BPS
66
0.58
1.5
81.3
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010544
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011076
1862694 - 1869893
7200