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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1871811_1873337_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1871811 - 1873337
Intron Length:
1527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
AAAAAAAAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
TGTGAATGAAAA
Flanking Amino Acid:
EDKDKEKKNAKWVCTLLCN*
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
44.6
-0.3
1
27.9
34.2
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
43.6
-0.4
2
57.17
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025826
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018517
1871783 - 1875064
3282