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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1879291_1879419_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1879291 - 1879419
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCCT
5'SS Class:
major
3'SS Sequence:
TTTTGTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATGATG
Flanking Amino Acid:
IRKTSMTLTHRKVILRVSRT
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
68.9
41.6
Major BPS
100
1.24
0.5
100
0
Major PPT
83.8
0.76
0.7
82.3
29.8
Minor 5ss
33.5
-1.9
3.4
48.9
46.7
Minor BPS
56.3
0.05
1.7
65.08
36.8

Associated Gene:

Gene:
CCDC47
Ensembl Gene ID:
ENSAPLG00000011325
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011798
1878006 - 1888210
10205