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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1881166_1881481_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1881166 - 1881481
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATT
Flanking Amino Acid:
SC*KATLLLLGTMAPVKKPQ
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
100
1.24
0.5
100
0
Major PPT
84.5
0.78
0.8
77.1
36.9
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
60.5
0.41
1.7
78.3
39.3

Associated Gene:

Gene:
CCDC47
Ensembl Gene ID:
ENSAPLG00000011325
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011798
1878006 - 1888210
10205