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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1881604_1881927_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1881604 - 1881927
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATCAATG
Flanking Amino Acid:
CAVKECLFS*SFSRDKTY*M
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.2
0.66
0.9
76.9
37.3
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
51.5
-0
1.8
61.84
40.1

Associated Gene:

Gene:
CCDC47
Ensembl Gene ID:
ENSAPLG00000011325
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011798
1878006 - 1888210
10205