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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1881994_1882946_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1881994 - 1882946
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
TTCTGTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ATGCTAATAACT
Flanking Amino Acid:
RA**GQLVTKCK*K*Q*MMK
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.8
40.4
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
78.3
0.64
0.8
72.5
32.4
Minor 5ss
43.1
-0.8
2.8
56.7
41.7
Minor BPS
48.9
-0
1.9
70.03
40.3

Associated Gene:

Gene:
CCDC47
Ensembl Gene ID:
ENSAPLG00000011325
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011798
1878006 - 1888210
10205