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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1884025_1884578_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1884025 - 1884578
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCTTG
5'SS Class:
major
3'SS Sequence:
GTTTCTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GAGAAACTAACC
Flanking Amino Acid:
GRSQRE*WTQR*YISSRTML
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
67.7
40.1
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
82.6
0.73
0.8
77.7
31
Minor 5ss
42.1
-0.9
3
55.5
48.6
Minor BPS
41.5
-0.6
2
48.91
39.7

Associated Gene:

Gene:
CCDC47
Ensembl Gene ID:
ENSAPLG00000011325
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011798
1878006 - 1888210
10205