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Intron Name: Anas_platyrhynchos_platyrhynchos_28_1886472_1886643_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1886472 - 1886643

Intron Length:

172

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TTTATCTTAAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTATCTTAAAA

Flanking Amino Acid:

TKQRSSV*TEKANKKLIRTG

Intron Amino Acid Position:

402

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

81.6

33.2

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

69.9

0.45

1.1

72.2

36.8

Minor 5ss

43.6

-0.7

2.9

58.5

40.3

Minor BPS

73.5

0.73

1.4

81.31

33.4

Associated Gene:

Gene:

CCDC47

Ensembl Gene ID:

ENSAPLG00000011325

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011798

1878006 - 1888210

10205