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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1886812_1887129_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1886812 - 1887129
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GTTCATTTAGCT
Flanking Amino Acid:
RRIQKNSDGWRKLLCGVSRR
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.5
39.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
88.3
0.86
0.7
83.2
25.4
Minor 5ss
31.9
-2.1
3
38.5
46.6
Minor BPS
55.4
0.25
1.8
75.57
40.7

Associated Gene:

Gene:
CCDC47
Ensembl Gene ID:
ENSAPLG00000011325
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011798
1878006 - 1888210
10205